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HomeBiochemistry materials

Index

Educational materials

Reference books

Research materials

Conferences materials

Personal pages

Software

Educational materials

HordeNet
The information provided on this site is a service of the Hardy Research Group, Department of Chemistry, The University of Akron. Site contains educational information on general-, organic- and biochemistry.  Introduction to General, Organic and Biochemistry I and II page is included in Virtual Classroom on this site.

Amino Acid Information
Some information about various properties of Amino Acids

THCME Medical Biochemistry Course
Medical Biochemistry Course Guide Indiana University School of Medicine Terre Haute Center for Medical Education

NetBiochem
NetBiochem is intended to be a complete Medical Biochemistry center which can be accessed over a computer network. The distinction of this course is a lot of information in Tables.

Metabolic Pathways of Biochemistry,
the online reference of metabolism for students, scientists, and the world. This site is designed to graphically represent (with schemes and 3D models) all major metabolic pathways, primarily those important to human biochemistry.

Biochemistry 623. ADVANCED GENERAL BIOCHEMISTRY. Spring 1999
Detailed course.

Reference books

INTERNATIONAL UNION OF BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Comprehensive Recommendations on Biochemical & Organic Nomenclature, Symbols & Terminology etc.

Biochemical Pathways Map
Giant  detailed searchable scheme of biochemical reactions in a cell.

Metabolic Pathways of Biochemistry,
the online reference of metabolism for students, scientists, and the world. This site is designed to graphically represent (with schemes and 3D models) all major metabolic pathways, primarily those important to human biochemistry.

Atlas of Side-Chain and Main-Chain Hydrogen Bonding by Ian McDonald and Janet M Thornton
WWW Edition December 1994, original edition April 1993 Awarded 4/4 by the Magellan survey. This document is a graphical summary of hydrogen bonding in a dataset of high-resolution protein structures. It shows the distributions of the frequencies and geometries of hydrogen bonds formed by main-chain and side-chain donors and acceptors. It is hoped that it will serve as a record of the hydrogen bonding patterns of the standard hydrogen bonding groups for molecular modellers and crystallographers who would like to know whether the hydrogen bonding in their model is normative.

ExPASy - ENZYME - Enzyme nomenclature database
ENZYME is a repository of information relative to the nomenclature of enzymes. It is primarily based on the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB) and it describes each type of characterized enzyme for which an EC (Enzyme Commission) number has been provided. Release 24.0, January 1999, and updates up to 05-Feb-1999 (3704 entries)

ExPASy - PROSITE Database of protein families and domains
PROSITE is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs. Release 15, July 1998 and updates up to 05-Feb-1999 (contains 1025 documentation entries that describe 1361 different patterns, rules and profiles/matrices).

GLOSSARY OF TERMS USED IN MEDICINAL CHEMISTRY
The objective of the glossary is to provide in a single document a consistent terminology and concise definitions of terms covering the various aspects of medicinal chemistry. This was felt necessary with regard to the rapid changes occurring in medicinal chemistry and also by the need to establish international definition standards. Effectively the possibility exists that in different countries certain terms may not have the same meaning, in such a case the creation of an internationally accepted definition is particularly justified.

Mitochondrial Disease Information
The United Mitochondrial Disease Foundation. Glossary of Terms. Literature Reviews. Mitochondria and Disease. Mitochondrial Disease Descriptions. Mitochondrial Disease Publications by UMDF. UMDF Medical Article Database and Library.

Research materials

Biochemistry (Moscow) On-Line,
World Wide Web version of the international edition of Russian leading scientific journal in the fields of biochemistry and biochemical aspects of molecular biology, bioorganic chemistry, microbiology, immunology, physiology, and biomedical sciences. Some articles available in full text (in HTML)

Mitochondrial Disease Information
The United Mitochondrial Disease Foundation. Glossary of Terms. Literature Reviews. Mitochondria and Disease. Mitochondrial Disease Descriptions. Mitochondrial Disease Publications by UMDF. UMDF Medical Article Database and Library.

Conferences materials

The 1996 Albany Conference: Frontiers of Mitochondrial Research
September 19-22, 1996 Rensselaerville, New York

Frontiers of Mitochondrial Research
2nd Albany Conference, September 24-27, 1998 Rensselaerville, NY

Personal pages

Biochemistry and Biophysics department of University of Pennsylvania
Homepage

DEPARTMENT OF MEDICAL BIOCHEMISTRY of THE OHIO STATE UNIVERSITY COLLEGE OF MEDICINE
studying energy coupling and ATPases

Software

WebLab ViewerLite - tool for viewing the 3D structure of molecular models from Molecular Simulations Inc.

GEPASI  - Powerful software system for the simulation of chemical and biochemical kinetics (written by Pedro Mendes)

Berkeley Madonna program (ODE solver)  -  program for fast solving differential equations. Berkeley Madonna was conceived and developed by Robert Macey and George Oster of the University of California at Berkeley. Programmed by Tim Zahnley. See description on the page Berkeley Madonna program 

XSIM - Biochemistry modeling program. See description at the site of National Simulation Resource, University of Washington

Calculator 98 - Calc98 is a pocket calculator simulator program for the Microsoft Windows operating system, with many additional features and greater flexibility. It is especially designed for scientific and engineering users and includes a wide range of units conversions and scientific functions. It also has statistics, financial and time functions.

Molecular weights calculator by Matthew Monroe - necessary tool for lab - calculates substances weight, concentration, molarity